J3_9HA1_009

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9HA1|1|A|U|2833, 9HA1|1|A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA1_009 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1974

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9HA1|1|A|G|2812
9HA1|1|A|A|2813
9HA1|1|A|A|2814
9HA1|1|A|C|2815
*
9HA1|1|A|G|2831
9HA1|1|A|U|2832
9HA1|1|A|U|2833
9HA1|1|A|G|2834
9HA1|1|A|A|2835
9HA1|1|A|U|2836
*
9HA1|1|A|A|2882
9HA1|1|A|A|2883
9HA1|1|A|U|2884
9HA1|1|A|G|2885
9HA1|1|A|A|2886
9HA1|1|A|A|2887
9HA1|1|A|C|2888

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17