3D structure

PDB id
9HA4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.26 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
9HA4|1|A|U|2321, 9HA4|1|A|U|2334, 9HA4|1|A|A|2336
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9HA4_009 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.2629
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

9HA4|1|A|C|2295
9HA4|1|A|U|2296
9HA4|1|A|A|2297
9HA4|1|A|A|2298
9HA4|1|A|U|2299
*
9HA4|1|A|A|2317
9HA4|1|A|G|2318
9HA4|1|A|G|2319
9HA4|1|A|U|2320
9HA4|1|A|U|2321
9HA4|1|A|A|2322
9HA4|1|A|G|2323
*
9HA4|1|A|C|2332
9HA4|1|A|A|2333
9HA4|1|A|U|2334
9HA4|1|A|A|2335
9HA4|1|A|A|2336
9HA4|1|A|G|2337

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
Large ribosomal subunit protein uL5
Chain O
Large ribosomal subunit protein uL18
Chain W
Large ribosomal subunit protein bL27

Coloring options:


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