J3_9HA4_009
3D structure
- PDB id
- 9HA4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.26 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 9HA4|1|A|U|2321, 9HA4|1|A|U|2334, 9HA4|1|A|A|2336
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HA4_009 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.2629
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9HA4|1|A|C|2295
9HA4|1|A|U|2296
9HA4|1|A|A|2297
9HA4|1|A|A|2298
9HA4|1|A|U|2299
*
9HA4|1|A|A|2317
9HA4|1|A|G|2318
9HA4|1|A|G|2319
9HA4|1|A|U|2320
9HA4|1|A|U|2321
9HA4|1|A|A|2322
9HA4|1|A|G|2323
*
9HA4|1|A|C|2332
9HA4|1|A|A|2333
9HA4|1|A|U|2334
9HA4|1|A|A|2335
9HA4|1|A|A|2336
9HA4|1|A|G|2337
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain O
- Large ribosomal subunit protein uL18
- Chain W
- Large ribosomal subunit protein bL27
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