J3_9HA5_004

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9HA5|1|A|U|321, 9HA5|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA5_004 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1576

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9HA5|1|A|G|297
9HA5|1|A|G|298
9HA5|1|A|A|299
9HA5|1|A|A|300
9HA5|1|A|G|301
*
9HA5|1|A|C|316
9HA5|1|A|G|317
9HA5|1|A|C|318
9HA5|1|A|G|319
9HA5|1|A|A|320
9HA5|1|A|U|321
9HA5|1|A|A|322
9HA5|1|A|C|323
9HA5|1|A|A|324
9HA5|1|A|G|325
*
9HA5|1|A|C|337
9HA5|1|A|G|338
9HA5|1|A|U|339
9HA5|1|A|A|340
9HA5|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24