J3_9HA5_007

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9HA5|1|A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA5_007 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1573

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9HA5|1|A|C|1298
9HA5|1|A|G|1299
9HA5|1|A|G|1300
9HA5|1|A|A|1301
9HA5|1|A|A|1302
9HA5|1|A|G|1303
*
9HA5|1|A|C|1625
9HA5|1|A|A|1626
9HA5|1|A|G|1627
*
9HA5|1|A|C|1639
9HA5|1|A|A|1640
9HA5|1|A|A|1641
9HA5|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains