J3_9HA6_003
3D structure
- PDB id
- 9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mature 50S subunit supplemented with Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9HA6|1|A|U|72, 9HA6|1|A|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HA6_003 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0984
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9HA6|1|A|A|56
9HA6|1|A|C|57
*
9HA6|1|A|G|70
9HA6|1|A|A|71
9HA6|1|A|U|72
9HA6|1|A|A|73
9HA6|1|A|A|74
9HA6|1|A|G|75
9HA6|1|A|C|76
*
9HA6|1|A|G|110
9HA6|1|A|A|111
9HA6|1|A|U|112
9HA6|1|A|U|113
9HA6|1|A|U|114
Current chains
- Chain A
- 23S ribosomal rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain T
- Large ribosomal subunit protein uL23
- Chain Y
- Large ribosomal subunit protein uL29
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