J3_9HA6_009

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

9HA6|1|A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA6_009 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1905

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9HA6|1|A|U|1344
9HA6|1|A|C|1345
9HA6|1|A|G|1346
9HA6|1|A|A|1347
9HA6|1|A|C|1348
9HA6|1|A|C|1349
*
9HA6|1|A|G|1382
9HA6|1|A|A|1383
9HA6|1|A|A|1384
9HA6|1|A|A|1385
*
9HA6|1|A|U|1402
9HA6|1|A|A|1403

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23