3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
9HA6|1|A|A|2518, 9HA6|1|A|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9HA6_015 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.1979
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

9HA6|1|A|C|2517
9HA6|1|A|A|2518
9HA6|1|A|U|2519
9HA6|1|A|C|2520
*
9HA6|1|A|G|2545
9HA6|1|A|U|2546
9HA6|1|A|A|2547
*
9HA6|1|A|U|2561
9HA6|1|A|U|2562
9HA6|1|A|U|2563
9HA6|1|A|A|2564
9HA6|1|A|A|2565
9HA6|1|A|A|2566
9HA6|1|A|G|2567

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
Large ribosomal subunit protein uL14

Coloring options:


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