J3_9HA7_012

3D structure

PDB id

9HA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.37 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9HA7|1|A|U|2833, 9HA7|1|A|A|2835

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA7_012 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1908

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9HA7|1|A|G|2812
9HA7|1|A|A|2813
9HA7|1|A|A|2814
9HA7|1|A|C|2815
*
9HA7|1|A|G|2831
9HA7|1|A|U|2832
9HA7|1|A|U|2833
9HA7|1|A|G|2834
9HA7|1|A|A|2835
9HA7|1|A|U|2836
*
9HA7|1|A|A|2882
9HA7|1|A|A|2883
9HA7|1|A|U|2884
9HA7|1|A|G|2885
9HA7|1|A|A|2886
9HA7|1|A|A|2887
9HA7|1|A|C|2888

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17