J3_9HAL_001

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HAL_001 not in the Motif Atlas

Homologous match to J3_4WF9_010

Geometric discrepancy: 0.2609

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9HAL|1|A|G|30
9HAL|1|A|C|31
*
9HAL|1|A|G|474
9HAL|1|A|C|475
9HAL|1|A|G|476
9HAL|1|A|A|477
9HAL|1|A|A|478
9HAL|1|A|A|479
9HAL|1|A|A|480
9HAL|1|A|G|481
*
9HAL|1|A|C|509
9HAL|1|A|C|510

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein uL24