J3_9HAL_003

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

9HAL|1|A|U|72, 9HAL|1|A|A|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HAL_003 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.169

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9HAL|1|A|A|56
9HAL|1|A|C|57
*
9HAL|1|A|G|70
9HAL|1|A|A|71
9HAL|1|A|U|72
9HAL|1|A|A|73
9HAL|1|A|A|74
9HAL|1|A|G|75
9HAL|1|A|C|76
*
9HAL|1|A|G|110
9HAL|1|A|A|111
9HAL|1|A|U|112
9HAL|1|A|U|113
9HAL|1|A|U|114

Current chains

Chain A

23S ribosomal RNA

Nearby chains