J3_9HFO_007
3D structure
- PDB id
- 9HFO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translation-initiation state of human mitochondrial ribosome small subunit (State G)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUCAG*CGCAAGU*AAAGACG
- Length
- 20 nucleotides
- Bulged bases
- 9HFO|1|A|U|1270
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HFO_007 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.5808
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9HFO|1|A|C|1268
9HFO|1|A|U|1269
9HFO|1|A|U|1270
9HFO|1|A|C|1271
9HFO|1|A|A|1272
9HFO|1|A|G|1273
*
9HFO|1|A|C|1302
9HFO|1|A|G|1303
9HFO|1|A|C|1304
9HFO|1|A|A|1305
9HFO|1|A|A|1306
9HFO|1|A|G|1307
9HFO|1|A|U|1308
*
9HFO|1|A|A|1317
9HFO|1|A|A|1318
9HFO|1|A|A|1319
9HFO|1|A|G|1320
9HFO|1|A|A|1321
9HFO|1|A|C|1322
9HFO|1|A|G|1323
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 1
- 28S ribosomal protein S35, mitochondrial
- Chain C
- 28S ribosomal protein S24, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
- Chain H
- 28S ribosomal protein S10, mitochondrial
- Chain K
- 28S ribosomal protein S14, mitochondrial
Coloring options: