J3_9HLZ_012

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAGAUAGC*GUAAUAAGAACAAAG*CAAC

Length

30 nucleotides

Bulged bases

9HLZ|1|AA|U|1633, 9HLZ|1|AA|U|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HLZ|1|AA|G|1626
9HLZ|1|AA|C|1627
9HLZ|1|AA|A|1628
9HLZ|1|AA|A|1629
9HLZ|1|AA|A|1630
9HLZ|1|AA|G|1631
9HLZ|1|AA|A|1632
9HLZ|1|AA|U|1633
9HLZ|1|AA|A|1634
9HLZ|1|AA|G|1635
9HLZ|1|AA|C|1636
*
9HLZ|1|AA|G|1658
9HLZ|1|AA|U|1659
9HLZ|1|AA|A|1660
9HLZ|1|AA|A|1661
9HLZ|1|AA|U|1662
9HLZ|1|AA|A|1663
9HLZ|1|AA|A|1664
9HLZ|1|AA|G|1665
9HLZ|1|AA|A|1666
9HLZ|1|AA|A|1667
9HLZ|1|AA|C|1668
9HLZ|1|AA|A|1669
9HLZ|1|AA|A|1670
9HLZ|1|AA|A|1671
9HLZ|1|AA|G|1672
*
9HLZ|1|AA|C|1887
9HLZ|1|AA|A|1888
9HLZ|1|AA|A|1889
9HLZ|1|AA|C|1890

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain II

Large ribosomal subunit protein uL14m

Chain MM

Large ribosomal subunit protein bL19m

Chain O

Small ribosomal subunit protein uS15m

Chain TT

Large ribosomal subunit protein uL29m

Chain r

Small subunit ribosomal RNA; SSU rRNA