J3_9HLZ_028
3D structure
- PDB id
- 9HLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGA*UAU*AGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HLZ_028 not in the Motif Atlas
- Homologous match to J3_6CZR_019
- Geometric discrepancy: 0.1671
- The information below is about J3_6CZR_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HLZ|1|r|U|1008
9HLZ|1|r|G|1009
9HLZ|1|r|G|1010
9HLZ|1|r|A|1011
*
9HLZ|1|r|U|1267
9HLZ|1|r|A|1268
9HLZ|1|r|U|1269
*
9HLZ|1|r|A|1405
9HLZ|1|r|G|1406
9HLZ|1|r|A|1407
9HLZ|1|r|A|1408
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9m
- Chain M
- Small ribosomal subunit protein uS13m
- Chain t
- Transfer RNA; tRNA
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