J3_9HM0_003

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUCUA*UAGUAG*CAAAUCUGG

Length

22 nucleotides

Bulged bases

9HM0|1|AA|A|680, 9HM0|1|AA|U|681, 9HM0|1|AA|U|683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|C|592
9HM0|1|AA|G|593
9HM0|1|AA|A|594
9HM0|1|AA|U|595
9HM0|1|AA|C|596
9HM0|1|AA|U|597
9HM0|1|AA|A|598
*
9HM0|1|AA|U|664
9HM0|1|AA|A|665
9HM0|1|AA|G|666
9HM0|1|AA|U|667
9HM0|1|AA|A|668
9HM0|1|AA|G|669
*
9HM0|1|AA|C|677
9HM0|1|AA|A|678
9HM0|1|AA|A|679
9HM0|1|AA|A|680
9HM0|1|AA|U|681
9HM0|1|AA|C|682
9HM0|1|AA|U|683
9HM0|1|AA|G|684
9HM0|1|AA|G|685

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain BB

Large ribosomal subunit protein uL2m

Chain OO

Large ribosomal subunit protein uL22m

Chain YY

Large ribosomal subunit protein bL34m