J3_9HM0_006

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AA*UAAAAUC*GUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|A|961
9HM0|1|AA|A|962
*
9HM0|1|AA|U|1062
9HM0|1|AA|A|1063
9HM0|1|AA|A|1064
9HM0|1|AA|A|1065
9HM0|1|AA|A|1066
9HM0|1|AA|U|1067
9HM0|1|AA|C|1068
*
9HM0|1|AA|G|1085
9HM0|1|AA|U|1086
9HM0|1|AA|U|1087

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain FF

Large ribosomal subunit protein uL6m

Chain KK

Large ribosomal subunit protein uL16m

Chain cc

Large ribosomal subunit protein mL60