J3_9HM0_011

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAAGAUAG*CAAAG*CAAC

Length

19 nucleotides

Bulged bases

9HM0|1|AA|U|1633, 9HM0|1|AA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|G|1626
9HM0|1|AA|C|1627
9HM0|1|AA|A|1628
9HM0|1|AA|A|1629
9HM0|1|AA|A|1630
9HM0|1|AA|G|1631
9HM0|1|AA|A|1632
9HM0|1|AA|U|1633
9HM0|1|AA|A|1634
9HM0|1|AA|G|1635
*
9HM0|1|AA|C|1668
9HM0|1|AA|A|1669
9HM0|1|AA|A|1670
9HM0|1|AA|A|1671
9HM0|1|AA|G|1672
*
9HM0|1|AA|C|1887
9HM0|1|AA|A|1888
9HM0|1|AA|A|1889
9HM0|1|AA|C|1890

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain II

Large ribosomal subunit protein uL14m

Chain TT

Large ribosomal subunit protein uL29m

Chain r

Small subunit ribosomal RNA; SSU rRNA