J3_9HM0_014
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCAUAAUGAACAA*UGAUAAC
- Length
- 23 nucleotides
- Bulged bases
- 9HM0|1|AA|A|2655, 9HM0|1|AA|U|2657, 9HM0|1|AA|A|2689, 9HM0|1|AA|A|2692
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HM0|1|AA|G|2309
9HM0|1|AA|U|2310
9HM0|1|AA|C|2311
*
9HM0|1|AA|G|2651
9HM0|1|AA|C|2652
9HM0|1|AA|A|2653
9HM0|1|AA|U|2654
9HM0|1|AA|A|2655
9HM0|1|AA|A|2656
9HM0|1|AA|U|2657
9HM0|1|AA|G|2658
9HM0|1|AA|A|2659
9HM0|1|AA|A|2660
9HM0|1|AA|C|2661
9HM0|1|AA|A|2662
9HM0|1|AA|A|2663
*
9HM0|1|AA|U|2687
9HM0|1|AA|G|2688
9HM0|1|AA|A|2689
9HM0|1|AA|U|2690
9HM0|1|AA|A|2691
9HM0|1|AA|A|2692
9HM0|1|AA|C|2693
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain EE
- Large ribosomal subunit protein uL5m
- Chain JJ
- Large ribosomal subunit protein uL15m
- Chain RR
- Large ribosomal subunit protein bL27m
- Chain XX
- Large ribosomal subunit protein bL33m
- Chain ZZ
- Large ribosomal subunit protein bL35m
- Chain t
- Transfer RNA; tRNA
Coloring options: