J3_9HM0_016

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAAA*UA*UAAAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|A|2447
9HM0|1|AA|A|2448
9HM0|1|AA|A|2449
9HM0|1|AA|A|2450
*
9HM0|1|AA|U|2466
9HM0|1|AA|A|2467
*
9HM0|1|AA|U|2582
9HM0|1|AA|A|2583
9HM0|1|AA|A|2584
9HM0|1|AA|A|2585
9HM0|1|AA|U|2586
9HM0|1|AA|U|2587

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain EE

Large ribosomal subunit protein uL5m

Chain KK

Large ribosomal subunit protein uL16m

Chain RR

Large ribosomal subunit protein bL27m