J3_9HM0_019

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UA*UAAUAAUUAU*AAUUUA

Length

18 nucleotides

Bulged bases

9HM0|1|AA|U|3150, 9HM0|1|AA|A|3151, 9HM0|1|AA|U|3154, 9HM0|1|AA|A|3155, 9HM0|1|AA|U|3252, 9HM0|1|AA|U|3253, 9HM0|1|AA|U|3254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|U|3130
9HM0|1|AA|A|3131
*
9HM0|1|AA|U|3147
9HM0|1|AA|A|3148
9HM0|1|AA|A|3149
9HM0|1|AA|U|3150
9HM0|1|AA|A|3151
9HM0|1|AA|A|3152
9HM0|1|AA|U|3153
9HM0|1|AA|U|3154
9HM0|1|AA|A|3155
9HM0|1|AA|U|3156
*
9HM0|1|AA|A|3250
9HM0|1|AA|A|3251
9HM0|1|AA|U|3252
9HM0|1|AA|U|3253
9HM0|1|AA|U|3254
9HM0|1|AA|A|3255

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain LL

Large ribosomal subunit protein bL17m

Chain MM

Large ribosomal subunit protein bL19m

Chain WW

Large ribosomal subunit protein bL32m