J3_9HM0_022

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAU*AAAU*AAUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|U|412
9HM0|1|r|G|413
9HM0|1|r|A|414
9HM0|1|r|U|415
*
9HM0|1|r|A|487
9HM0|1|r|A|488
9HM0|1|r|A|489
9HM0|1|r|U|490
*
9HM0|1|r|A|499
9HM0|1|r|A|500
9HM0|1|r|U|501
9HM0|1|r|A|502
9HM0|1|r|A|503
9HM0|1|r|A|504
9HM0|1|r|A|505

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 6

Small ribosomal subunit protein mS45

Chain D

Small ribosomal subunit protein uS4m