J3_9HM0_023
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGA*UUAG*CA
- Length
- 9 nucleotides
- Bulged bases
- 9HM0|1|r|A|716
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HM0_023 not in the Motif Atlas
- Geometric match to J3_1KUQ_001
- Geometric discrepancy: 0.2039
- The information below is about J3_1KUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9HM0|1|r|U|696
9HM0|1|r|G|697
9HM0|1|r|A|698
*
9HM0|1|r|U|714
9HM0|1|r|U|715
9HM0|1|r|A|716
9HM0|1|r|G|717
*
9HM0|1|r|C|819
9HM0|1|r|A|820
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8m
- Chain L
- Small ribosomal subunit protein uS12m
- Chain O
- Small ribosomal subunit protein uS15m
- Chain Q
- Small ribosomal subunit protein uS17m
- Chain U
- Small ribosomal subunit protein mS23
- Chain V
- Small ribosomal subunit protein mS26
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