J3_9HM0_025

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AA*UAAUAUAUG*UAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|A|737
9HM0|1|r|A|738
*
9HM0|1|r|U|783
9HM0|1|r|A|784
9HM0|1|r|A|785
9HM0|1|r|U|786
9HM0|1|r|A|787
9HM0|1|r|U|788
9HM0|1|r|A|789
9HM0|1|r|U|790
9HM0|1|r|G|791
*
9HM0|1|r|U|798
9HM0|1|r|A|799
9HM0|1|r|U|800

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS6m

Chain K

Small ribosomal subunit protein uS11m

Chain R

Small ribosomal subunit protein bS18m

Chain T

Small ribosomal subunit protein bS21m