J3_9HM0_027
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUUAAG*CUAGUAA*UGAAUAUUCUAAC
- Length
- 28 nucleotides
- Bulged bases
- 9HM0|1|r|U|1447, 9HM0|1|r|U|1448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HM0|1|r|G|997
9HM0|1|r|A|998
9HM0|1|r|C|999
9HM0|1|r|U|1000
9HM0|1|r|U|1001
9HM0|1|r|A|1002
9HM0|1|r|A|1003
9HM0|1|r|G|1004
*
9HM0|1|r|C|1412
9HM0|1|r|U|1413
9HM0|1|r|A|1414
9HM0|1|r|G|1415
9HM0|1|r|U|1416
9HM0|1|r|A|1417
9HM0|1|r|A|1418
*
9HM0|1|r|U|1441
9HM0|1|r|G|1442
9HM0|1|r|A|1443
9HM0|1|r|A|1444
9HM0|1|r|U|1445
9HM0|1|r|A|1446
9HM0|1|r|U|1447
9HM0|1|r|U|1448
9HM0|1|r|C|1449
9HM0|1|r|U|1450
9HM0|1|r|A|1451
9HM0|1|r|A|1452
9HM0|1|r|C|1453
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7m
- Chain I
- Small ribosomal subunit protein uS9m
- Chain W
- Small ribosomal subunit protein mS29
- Chain Z
- Small ribosomal subunit protein mS37
- Chain t
- Transfer RNA; tRNA
Coloring options: