J3_9HM0_029

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUG*CAG*CUUAUA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|U|1055
9HM0|1|r|U|1056
9HM0|1|r|U|1057
9HM0|1|r|G|1058
*
9HM0|1|r|C|1092
9HM0|1|r|A|1093
9HM0|1|r|G|1094
*
9HM0|1|r|C|1242
9HM0|1|r|U|1243
9HM0|1|r|U|1244
9HM0|1|r|A|1245
9HM0|1|r|U|1246
9HM0|1|r|A|1247

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14m

Chain X

Small ribosomal subunit protein mS33