J3_9HMW_027
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9HMW|1|C3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HMW_027 not in the Motif Atlas
- Geometric match to J3_9AXU_026
- Geometric discrepancy: 0.2188
- The information below is about J3_9AXU_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9HMW|1|C3|U|9
9HMW|1|C3|C|10
9HMW|1|C3|A|11
9HMW|1|C3|U|12
9HMW|1|C3|A|13
9HMW|1|C3|C|14
*
9HMW|1|C3|G|65
9HMW|1|C3|G|66
*
9HMW|1|C3|U|109
9HMW|1|C3|G|110
Current chains
- Chain C3
- Ribosomal RNA 5S
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AM
- Large ribosomal subunit protein eL21z/eL21y
- Chain BJ
- Large ribosomal subunit protein uL16y
- Chain BK
- Large ribosomal subunit protein uL18z
Coloring options: