J3_9HUQ_004
3D structure
- PDB id
- 9HUQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9HUQ|1|b|U|448, 9HUQ|1|b|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HUQ_004 not in the Motif Atlas
- Geometric match to J3_9DFE_003
- Geometric discrepancy: 0.114
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9HUQ|1|b|C|32
9HUQ|1|b|C|33
9HUQ|1|b|U|34
9HUQ|1|b|G|35
*
9HUQ|1|b|C|445
9HUQ|1|b|G|446
9HUQ|1|b|A|447
9HUQ|1|b|U|448
9HUQ|1|b|A|449
9HUQ|1|b|G|450
9HUQ|1|b|U|451
9HUQ|1|b|G|452
9HUQ|1|b|A|453
9HUQ|1|b|A|454
9HUQ|1|b|C|455
9HUQ|1|b|C|456
9HUQ|1|b|A|457
9HUQ|1|b|G|458
9HUQ|1|b|U|459
9HUQ|1|b|A|460
9HUQ|1|b|C|461
*
9HUQ|1|b|G|468
9HUQ|1|b|G|469
9HUQ|1|b|A|470
9HUQ|1|b|A|471
9HUQ|1|b|A|472
9HUQ|1|b|G|473
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain e
- Large ribosomal subunit protein uL4
- Chain q
- Large ribosomal subunit protein bL20
- Chain t
- Large ribosomal subunit protein uL23
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