J3_9HUQ_009

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HUQ_009 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2022

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9HUQ|1|b|C|1298
9HUQ|1|b|G|1299
9HUQ|1|b|G|1300
9HUQ|1|b|A|1301
9HUQ|1|b|A|1302
9HUQ|1|b|G|1303
*
9HUQ|1|b|C|1625
9HUQ|1|b|A|1626
9HUQ|1|b|G|1627
*
9HUQ|1|b|C|1639
9HUQ|1|b|A|1640
9HUQ|1|b|A|1641
9HUQ|1|b|G|1642

Current chains

Chain b

23S rRNA

Nearby chains