J3_9HUQ_011

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HUQ_011 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5996

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9HUQ|1|b|U|1344
9HUQ|1|b|C|1345
9HUQ|1|b|G|1346
9HUQ|1|b|A|1347
9HUQ|1|b|C|1348
9HUQ|1|b|C|1349
9HUQ|1|b|C|1350
*
9HUQ|1|b|G|1381
9HUQ|1|b|G|1382
9HUQ|1|b|A|1383
9HUQ|1|b|A|1384
9HUQ|1|b|A|1385
*
9HUQ|1|b|U|1402
9HUQ|1|b|A|1403

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23