J3_9HY6_002

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HY6_002 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.1103

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9HY6|1|b|G|30
9HY6|1|b|C|31
*
9HY6|1|b|G|474
9HY6|1|b|C|475
9HY6|1|b|G|476
9HY6|1|b|A|477
9HY6|1|b|A|478
9HY6|1|b|A|479
9HY6|1|b|A|480
9HY6|1|b|G|481
*
9HY6|1|b|C|509
9HY6|1|b|C|510

Current chains

Chain b

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL20

Chain u

Large ribosomal subunit protein uL24