J3_9HY6_011

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HY6_011 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5995

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9HY6|1|b|U|1344
9HY6|1|b|C|1345
9HY6|1|b|G|1346
9HY6|1|b|A|1347
9HY6|1|b|C|1348
9HY6|1|b|C|1349
9HY6|1|b|C|1350
*
9HY6|1|b|G|1381
9HY6|1|b|G|1382
9HY6|1|b|A|1383
9HY6|1|b|A|1384
9HY6|1|b|A|1385
*
9HY6|1|b|U|1402
9HY6|1|b|A|1403

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23