J3_9I14_010

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9I14|1|L5|A|2396, 9I14|1|L5|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|C|2393
9I14|1|L5|G|2394
9I14|1|L5|A|2395
9I14|1|L5|A|2396
9I14|1|L5|G|2397
9I14|1|L5|U|2398
9I14|1|L5|G|2399
*
9I14|1|L5|C|2805
9I14|1|L5|A|2806
9I14|1|L5|A|2807
*
9I14|1|L5|U|2819
9I14|1|L5|C|2820
9I14|1|L5|U|2821
9I14|1|L5|G|2822

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34