J3_9I1W_008

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UC*GAGGACCGCG*CAAGGA

Length

18 nucleotides

Bulged bases

9I1W|1|1|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|U|493
9I1W|1|1|C|494
*
9I1W|1|1|G|579
9I1W|1|1|A|580
9I1W|1|1|G|581
9I1W|1|1|G|582
9I1W|1|1|A|583
9I1W|1|1|C|584
9I1W|1|1|C|585
9I1W|1|1|G|586
9I1W|1|1|C|587
9I1W|1|1|G|588
*
9I1W|1|1|C|594
9I1W|1|1|A|595
9I1W|1|1|A|596
9I1W|1|1|G|597
9I1W|1|1|G|598
9I1W|1|1|A|599

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein l7-like protein

Chain Le

60S ribosomal protein L32-like protein