J3_9I1W_009

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGA(A2M)CUA*UGG*CGAA

Length

14 nucleotides

Bulged bases

9I1W|1|1|A2M|799, 9I1W|1|1|G|906, 9I1W|1|1|A|907

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|U|796
9I1W|1|1|G|797
9I1W|1|1|A|798
9I1W|1|1|A2M|799
9I1W|1|1|C|800
9I1W|1|1|U|801
9I1W|1|1|A|802
*
9I1W|1|1|U|887
9I1W|1|1|G|888
9I1W|1|1|G|889
*
9I1W|1|1|C|905
9I1W|1|1|G|906
9I1W|1|1|A|907
9I1W|1|1|A|908

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LN

Ribosomal protein L15

Chain Lj

Ribosomal protein L37