J3_9I1W_010

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUAG*CGC(A2M)G*UCAAAU

Length

15 nucleotides

Bulged bases

9I1W|1|1|A|878

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|A|810
9I1W|1|1|U|811
9I1W|1|1|A|812
9I1W|1|1|G|813
*
9I1W|1|1|C|845
9I1W|1|1|G|846
9I1W|1|1|C|847
9I1W|1|1|A2M|848
9I1W|1|1|G|849
*
9I1W|1|1|U|874
9I1W|1|1|C|875
9I1W|1|1|A|876
9I1W|1|1|A|877
9I1W|1|1|A|878
9I1W|1|1|U|879

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LR

Ribosomal protein L19

Chain Lg

Ribosomal protein l34-like protein