J3_9I1W_011

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UU*AGAAG*CAUUCGA

Length

14 nucleotides

Bulged bases

9I1W|1|1|A|1048, 9I1W|1|1|U|1077, 9I1W|1|1|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|U|968
9I1W|1|1|U|969
*
9I1W|1|1|A|1045
9I1W|1|1|G|1046
9I1W|1|1|A|1047
9I1W|1|1|A|1048
9I1W|1|1|G|1049
*
9I1W|1|1|C|1075
9I1W|1|1|A|1076
9I1W|1|1|U|1077
9I1W|1|1|U|1078
9I1W|1|1|C|1079
9I1W|1|1|G|1080
9I1W|1|1|A|1081

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29