J3_9I1W_014

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAAA*UCAUAAC*GUC

Length

14 nucleotides

Bulged bases

9I1W|1|1|U|1820, 9I1W|1|1|A|1821, 9I1W|1|1|A|1822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|G|1471
9I1W|1|1|A|1472
9I1W|1|1|A|1473
9I1W|1|1|A|1474
*
9I1W|1|1|U|1817
9I1W|1|1|C|1818
9I1W|1|1|A|1819
9I1W|1|1|U|1820
9I1W|1|1|A|1821
9I1W|1|1|A|1822
9I1W|1|1|C|1823
*
9I1W|1|1|G|1832
9I1W|1|1|U|1833
9I1W|1|1|C|1834

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain Lg

Ribosomal protein l34-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

Ribosomal protein eL39