J3_9I1W_016
3D structure
- PDB id
- 9I1W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAUAG*CGUU(PSU)CAAAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 9I1W|1|1|C|1539, 9I1W|1|1|A|1541, 9I1W|1|1|U|1560
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I1W|1|1|C|1521
9I1W|1|1|A|1522
9I1W|1|1|U|1523
9I1W|1|1|A|1524
9I1W|1|1|G|1525
*
9I1W|1|1|C|1534
9I1W|1|1|G|1535
9I1W|1|1|U|1536
9I1W|1|1|U|1537
9I1W|1|1|PSU|1538
9I1W|1|1|C|1539
9I1W|1|1|A|1540
9I1W|1|1|A|1541
9I1W|1|1|A|1542
9I1W|1|1|G|1543
*
9I1W|1|1|C|1558
9I1W|1|1|G|1559
9I1W|1|1|U|1560
9I1W|1|1|G|1561
9I1W|1|1|U|1562
9I1W|1|1|G|1563
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lj
- Ribosomal protein L37
Coloring options: