J3_9I1W_020
3D structure
- PDB id
- 9I1W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- G(PSU)C*GCCUAUCGAUCC*(OMG)GUGCC
- Length
- 21 nucleotides
- Bulged bases
- 9I1W|1|1|C|2719, 9I1W|1|1|C|2756
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I1W|1|1|G|2610
9I1W|1|1|PSU|2611
9I1W|1|1|C|2612
*
9I1W|1|1|G|2713
9I1W|1|1|C|2714
9I1W|1|1|C|2715
9I1W|1|1|U|2716
9I1W|1|1|A|2717
9I1W|1|1|U|2718
9I1W|1|1|C|2719
9I1W|1|1|G|2720
9I1W|1|1|A|2721
9I1W|1|1|U|2722
9I1W|1|1|C|2723
9I1W|1|1|C|2724
*
9I1W|1|1|OMG|2752
9I1W|1|1|G|2753
9I1W|1|1|U|2754
9I1W|1|1|G|2755
9I1W|1|1|C|2756
9I1W|1|1|C|2757
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 9
- E-site tRNA (5'-R(P*CP*CP*A)-3')
- Chain LQ
- Ribosomal protein L18-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Lo
- 60S ribosomal protein L44-like protein
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