J3_9I1W_023

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAGACG*CCUAGCAGG*CGUAUUGCAAUUUAGA

Length

31 nucleotides

Bulged bases

9I1W|1|1|A|3126, 9I1W|1|1|G|3127, 9I1W|1|1|A|3160, 9I1W|1|1|G|3161, 9I1W|1|1|G|3164, 9I1W|1|1|A|3209, 9I1W|1|1|U|3211, 9I1W|1|1|C|3213, 9I1W|1|1|U|3216, 9I1W|1|1|U|3218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|U|3125
9I1W|1|1|A|3126
9I1W|1|1|G|3127
9I1W|1|1|A|3128
9I1W|1|1|C|3129
9I1W|1|1|G|3130
*
9I1W|1|1|C|3157
9I1W|1|1|C|3158
9I1W|1|1|U|3159
9I1W|1|1|A|3160
9I1W|1|1|G|3161
9I1W|1|1|C|3162
9I1W|1|1|A|3163
9I1W|1|1|G|3164
9I1W|1|1|G|3165
*
9I1W|1|1|C|3206
9I1W|1|1|G|3207
9I1W|1|1|U|3208
9I1W|1|1|A|3209
9I1W|1|1|U|3210
9I1W|1|1|U|3211
9I1W|1|1|G|3212
9I1W|1|1|C|3213
9I1W|1|1|A|3214
9I1W|1|1|A|3215
9I1W|1|1|U|3216
9I1W|1|1|U|3217
9I1W|1|1|U|3218
9I1W|1|1|A|3219
9I1W|1|1|G|3220
9I1W|1|1|A|3221

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Lf

60S ribosomal protein l33-like protein