J3_9I1W_024

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CC*GAUG*CUAG

Length

10 nucleotides

Bulged bases

9I1W|1|1|A|3257, 9I1W|1|1|U|3331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|C|3239
9I1W|1|1|C|3240
*
9I1W|1|1|G|3256
9I1W|1|1|A|3257
9I1W|1|1|U|3258
9I1W|1|1|G|3259
*
9I1W|1|1|C|3330
9I1W|1|1|U|3331
9I1W|1|1|A|3332
9I1W|1|1|G|3333

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Ld

Putative 60S ribosomal protein