J3_9I2D_024

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9I2D|1|L5|U|4882, 9I2D|1|L5|A|4938, 9I2D|1|L5|C|4940, 9I2D|1|L5|A|4943, 9I2D|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|G|4751
9I2D|1|L5|U|4752
9I2D|1|L5|U|4753
9I2D|1|L5|G|4754
*
9I2D|1|L5|C|4879
9I2D|1|L5|C|4880
9I2D|1|L5|U|4881
9I2D|1|L5|U|4882
9I2D|1|L5|C|4883
*
9I2D|1|L5|G|4936
9I2D|1|L5|C|4937
9I2D|1|L5|A|4938
9I2D|1|L5|C|4939
9I2D|1|L5|C|4940
9I2D|1|L5|G|4941
9I2D|1|L5|C|4942
9I2D|1|L5|A|4943
9I2D|1|L5|C|4944
9I2D|1|L5|G|4945
9I2D|1|L5|U|4946
9I2D|1|L5|U|4947
9I2D|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a