J3_9I3L_004
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9I3L|1|b|U|34, 9I3L|1|b|U|448, 9I3L|1|b|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I3L_004 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3787
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9I3L|1|b|C|32
9I3L|1|b|C|33
9I3L|1|b|U|34
9I3L|1|b|G|35
*
9I3L|1|b|C|445
9I3L|1|b|G|446
9I3L|1|b|A|447
9I3L|1|b|U|448
9I3L|1|b|A|449
9I3L|1|b|G|450
9I3L|1|b|U|451
9I3L|1|b|G|452
9I3L|1|b|A|453
9I3L|1|b|A|454
9I3L|1|b|C|455
9I3L|1|b|C|456
9I3L|1|b|A|457
9I3L|1|b|G|458
9I3L|1|b|U|459
9I3L|1|b|A|460
9I3L|1|b|C|461
*
9I3L|1|b|G|468
9I3L|1|b|G|469
9I3L|1|b|A|470
9I3L|1|b|A|471
9I3L|1|b|A|472
9I3L|1|b|G|473
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain e
- Large ribosomal subunit protein uL4
- Chain q
- Large ribosomal subunit protein bL20
- Chain t
- Large ribosomal subunit protein uL23
- Chain z
- Gelation factor
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