J3_9I3L_007
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9I3L|1|b|U|688, 9I3L|1|b|A|794, 9I3L|1|b|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I3L_007 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1676
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9I3L|1|b|U|685
9I3L|1|b|G|686
9I3L|1|b|A|687
9I3L|1|b|U|688
9I3L|1|b|C|689
9I3L|1|b|U|690
9I3L|1|b|A|691
*
9I3L|1|b|U|775
9I3L|1|b|G|776
9I3L|1|b|G|777
*
9I3L|1|b|C|793
9I3L|1|b|A|794
9I3L|1|b|A|795
9I3L|1|b|A|796
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
- Chain z
- Gelation factor
Coloring options: