J3_9I3L_009

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGGAUG*CAUUUAAAGAAA*UCACUGG

Length

27 nucleotides

Bulged bases

9I3L|1|b|C|1055, 9I3L|1|b|A|1059, 9I3L|1|b|A|1086, 9I3L|1|b|A|1105, 9I3L|1|b|U|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I3L|1|b|C|1054
9I3L|1|b|C|1055
9I3L|1|b|A|1056
9I3L|1|b|G|1057
9I3L|1|b|G|1058
9I3L|1|b|A|1059
9I3L|1|b|U|1060
9I3L|1|b|G|1061
*
9I3L|1|b|C|1081
9I3L|1|b|A|1082
9I3L|1|b|U|1083
9I3L|1|b|U|1084
9I3L|1|b|U|1085
9I3L|1|b|A|1086
9I3L|1|b|A|1087
9I3L|1|b|A|1088
9I3L|1|b|G|1089
9I3L|1|b|A|1090
9I3L|1|b|A|1091
9I3L|1|b|A|1092
*
9I3L|1|b|U|1103
9I3L|1|b|C|1104
9I3L|1|b|A|1105
9I3L|1|b|C|1106
9I3L|1|b|U|1107
9I3L|1|b|G|1108
9I3L|1|b|G|1109

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36