J3_9I5T_001
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5T_001 not in the Motif Atlas
- Geometric match to J3_8B0X_014
- Geometric discrepancy: 0.0557
- The information below is about J3_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|G|19
9I5T|1|A|C|20
*
9I5T|1|A|G|497
9I5T|1|A|U|498
9I5T|1|A|G|499
9I5T|1|A|A|500
9I5T|1|A|A|501
9I5T|1|A|A|502
9I5T|1|A|A|503
9I5T|1|A|G|504
*
9I5T|1|A|C|532
9I5T|1|A|C|533
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- Large ribosomal subunit protein bL20
- Chain V
- Large ribosomal subunit protein uL22
- Chain X
- Large ribosomal subunit protein uL24
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