J3_9I5T_010

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCGGGGC*GAAGAA*UA

Length

15 nucleotides

Bulged bases

9I5T|1|A|A|1412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|U|1373
9I5T|1|A|C|1374
9I5T|1|A|G|1375
9I5T|1|A|G|1376
9I5T|1|A|G|1377
9I5T|1|A|G|1378
9I5T|1|A|C|1379
*
9I5T|1|A|G|1410
9I5T|1|A|A|1411
9I5T|1|A|A|1412
9I5T|1|A|G|1413
9I5T|1|A|A|1414
9I5T|1|A|A|1415
*
9I5T|1|A|U|1432
9I5T|1|A|A|1433

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein uL23