J3_9I5T_016

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*CUUGAU*AAUAG

Length

13 nucleotides

Bulged bases

9I5T|1|A|U|2819, 9I5T|1|A|A|2821, 9I5T|1|A|U|2869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|U|2800
9I5T|1|A|G|2801
*
9I5T|1|A|C|2817
9I5T|1|A|U|2818
9I5T|1|A|U|2819
9I5T|1|A|G|2820
9I5T|1|A|A|2821
9I5T|1|A|U|2822
*
9I5T|1|A|A|2867
9I5T|1|A|A|2868
9I5T|1|A|U|2869
9I5T|1|A|A|2870
9I5T|1|A|G|2871

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain E

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein bL17