J3_9I5V_002
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGCAAUAGACCC
- Length
- 28 nucleotides
- Bulged bases
- 9I5V|1|A|U|527, 9I5V|1|A|C|531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_002 not in the Motif Atlas
- Geometric match to J3_8B0X_032
- Geometric discrepancy: 0.0595
- The information below is about J3_8B0X_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.3
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9I5V|1|A|G|19
9I5V|1|A|C|20
*
9I5V|1|A|G|497
9I5V|1|A|U|498
9I5V|1|A|G|499
9I5V|1|A|A|500
9I5V|1|A|A|501
9I5V|1|A|A|502
9I5V|1|A|A|503
9I5V|1|A|G|504
9I5V|1|A|A|505
9I5V|1|A|A|506
9I5V|1|A|C|507
*
9I5V|1|A|G|519
9I5V|1|A|A|520
9I5V|1|A|G|521
9I5V|1|A|U|522
9I5V|1|A|G|523
9I5V|1|A|C|524
9I5V|1|A|A|525
9I5V|1|A|A|526
9I5V|1|A|U|527
9I5V|1|A|A|528
9I5V|1|A|G|529
9I5V|1|A|A|530
9I5V|1|A|C|531
9I5V|1|A|C|532
9I5V|1|A|C|533
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- Large ribosomal subunit protein bL20
- Chain V
- Large ribosomal subunit protein uL22
- Chain W
- Large ribosomal subunit protein uL23
- Chain X
- Large ribosomal subunit protein uL24
Coloring options: