J3_9I5V_004
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAAAAGC*GAUAU
- Length
- 14 nucleotides
- Bulged bases
- 9I5V|1|A|A|61, 9I5V|1|A|A|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_004 not in the Motif Atlas
- Geometric match to J3_8B0X_015
- Geometric discrepancy: 0.039
- The information below is about J3_8B0X_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.3
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9I5V|1|A|A|45
9I5V|1|A|C|46
*
9I5V|1|A|G|59
9I5V|1|A|A|60
9I5V|1|A|A|61
9I5V|1|A|A|62
9I5V|1|A|A|63
9I5V|1|A|G|64
9I5V|1|A|C|65
*
9I5V|1|A|G|98
9I5V|1|A|A|99
9I5V|1|A|U|100
9I5V|1|A|A|101
9I5V|1|A|U|102
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain 6
- Large ribosomal subunit protein bL34
- Chain W
- Large ribosomal subunit protein uL23
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