J3_9I5V_020

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAG*CACAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9I5V|1|a|U|870, 9I5V|1|a|A|872

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5V|1|a|C|826
9I5V|1|a|U|827
9I5V|1|a|A|828
9I5V|1|a|G|829
*
9I5V|1|a|C|856
9I5V|1|a|A|857
9I5V|1|a|C|858
9I5V|1|a|A|859
9I5V|1|a|G|860
*
9I5V|1|a|C|867
9I5V|1|a|G|868
9I5V|1|a|U|869
9I5V|1|a|U|870
9I5V|1|a|A|871
9I5V|1|a|A|872
9I5V|1|a|G|873

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

Small ribosomal subunit protein uS5

Chain o

Small ribosomal subunit protein uS8